STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN13Calpain 13; Belongs to the peptidase C2 family. (720 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
   
0.870
H0V7Z8_CAVPO
Uncharacterized protein.
   
 0.869
B3GNT6
Hexosyltransferase.
    
  0.691
ST6GALNAC1
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.
     
 0.686
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.643
H0W5F0_CAVPO
BH3-interacting domain death agonist; Counters the protective effect of Bcl-2.
   
  0.633
PEF1
Penta-EF-hand domain containing 1.
   
 0.598
PDCD6
Programmed cell death 6.
   
 0.598
GCA
Grancalcin.
   
0.596
SRI
Sorcin.
   
 0.596
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.