Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FCSK | GMDS | ENSCPOP00000013552 | ENSCPOP00000011022 | Fucose kinase. | GDP-mannose 4,6-dehydratase. | 0.686 |
FCSK | PNKP | ENSCPOP00000013552 | ENSCPOP00000004613 | Fucose kinase. | Polynucleotide kinase 3'-phosphatase. | 0.951 |
GMDS | FCSK | ENSCPOP00000011022 | ENSCPOP00000013552 | GDP-mannose 4,6-dehydratase. | Fucose kinase. | 0.686 |
GMDS | PNKP | ENSCPOP00000011022 | ENSCPOP00000004613 | GDP-mannose 4,6-dehydratase. | Polynucleotide kinase 3'-phosphatase. | 0.838 |
LIG3 | NEIL1 | ENSCPOP00000011732 | ENSCPOP00000009702 | DNA ligase. | Nei like DNA glycosylase 1. | 0.740 |
LIG3 | PNKP | ENSCPOP00000011732 | ENSCPOP00000004613 | DNA ligase. | Polynucleotide kinase 3'-phosphatase. | 0.933 |
LIG3 | POLB | ENSCPOP00000011732 | ENSCPOP00000009487 | DNA ligase. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.922 |
LIG3 | POLL | ENSCPOP00000011732 | ENSCPOP00000004947 | DNA ligase. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.811 |
LIG3 | XRCC1 | ENSCPOP00000011732 | ENSCPOP00000031519 | DNA ligase. | X-ray repair cross complementing 1. | 0.999 |
LIG4 | NEIL1 | ENSCPOP00000012853 | ENSCPOP00000009702 | DNA ligase. | Nei like DNA glycosylase 1. | 0.602 |
LIG4 | PNKP | ENSCPOP00000012853 | ENSCPOP00000004613 | DNA ligase. | Polynucleotide kinase 3'-phosphatase. | 0.880 |
LIG4 | POLB | ENSCPOP00000012853 | ENSCPOP00000009487 | DNA ligase. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.844 |
LIG4 | POLL | ENSCPOP00000012853 | ENSCPOP00000004947 | DNA ligase. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.864 |
LIG4 | XRCC1 | ENSCPOP00000012853 | ENSCPOP00000031519 | DNA ligase. | X-ray repair cross complementing 1. | 0.977 |
NEIL1 | LIG3 | ENSCPOP00000009702 | ENSCPOP00000011732 | Nei like DNA glycosylase 1. | DNA ligase. | 0.740 |
NEIL1 | LIG4 | ENSCPOP00000009702 | ENSCPOP00000012853 | Nei like DNA glycosylase 1. | DNA ligase. | 0.602 |
NEIL1 | PNKP | ENSCPOP00000009702 | ENSCPOP00000004613 | Nei like DNA glycosylase 1. | Polynucleotide kinase 3'-phosphatase. | 0.837 |
NEIL1 | POLB | ENSCPOP00000009702 | ENSCPOP00000009487 | Nei like DNA glycosylase 1. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.890 |
NEIL1 | POLL | ENSCPOP00000009702 | ENSCPOP00000004947 | Nei like DNA glycosylase 1. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.869 |
NEIL1 | XRCC1 | ENSCPOP00000009702 | ENSCPOP00000031519 | Nei like DNA glycosylase 1. | X-ray repair cross complementing 1. | 0.900 |
page 1 of 3