STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX19Sorting nexin 19. (994 aa)    
Predicted Functional Partners:
PPT2
Palmitoyl-protein thioesterase 2.
      
 0.556
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
      
 0.556
EXT1
Exostosin glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.
      
 0.552
TBX5
T-box transcription factor 5.
      
 0.550
BBS9
Bardet-Biedl syndrome 9.
      
 0.524
STARD3NL
STARD3 N-terminal like.
      
 0.509
RINT1
RAD50 interactor 1.
   
 
  0.457
Kifap3
Uncharacterized protein.
     
 0.453
USE1
Unconventional SNARE in the ER 1.
     
 0.441
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
     
 0.427
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.