STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM210BFamily with sequence similarity 210 member B. (191 aa)    
Predicted Functional Partners:
LMBR1
Limb development membrane protein 1; Belongs to the LIMR family.
      
 0.553
PUM2
Pumilio RNA binding family member 2.
    
   0.540
PUM1
Pumilio RNA binding family member 1.
    
   0.540
CHST4
Sulfotransferase; Belongs to the sulfotransferase 1 family.
   
  
 0.539
DMTN
Dematin actin binding protein.
   
  
 0.470
H0VQ29_CAVPO
Uncharacterized protein.
      
 0.412
FECH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
  
 0.407
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.