STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrrfip1Uncharacterized protein. (649 aa)    
Predicted Functional Partners:
FLII
FLII actin remodeling protein.
    
 
 0.938
CTNNB1
Catenin beta 1.
     
 0.742
TMOD1
Tropomodulin 1.
    
   0.655
DHX36
DEAH-box helicase 36.
      
 0.575
DDX41
DEAD-box helicase 41.
      
 0.516
MYD88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
    
 
 0.471
RBM44
RNA binding motif protein 44.
      
 0.468
DHX9
DExH-box helicase 9.
      
 0.464
GCFC2
GC-rich sequence DNA-binding factor 2.
      
 0.436
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.