STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATRNAttractin. (1425 aa)    
Predicted Functional Partners:
MGRN1
Mahogunin ring finger 1.
   
 
 0.874
CEACAM16
Carcinoembryonic antigen related cell adhesion molecule 16.
    
 
 0.773
PCED1A
PC-esterase domain containing 1A.
      
 0.771
TMEM216
Transmembrane protein 216.
      
 0.743
RNF157
Ring finger protein 157.
   
 
 0.733
HIF1AN
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.731
SCARF1
Scavenger receptor class F member 1.
      
 0.723
THRA
Thyroid hormone receptor alpha.
      
 0.720
SLC30A5
Solute carrier family 30 member 5.
   
  
 0.714
FOLR1
Folate receptor alpha.
      
 0.703
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.