Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GATA1GATA binding protein 1. (401 aa)    
Predicted Functional Partners:
ZFPM1
Zinc finger protein, FOG family member 1.
   
 0.999
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.995
LMO2
LIM domain only 2.
    
 0.990
FLI1
Fli-1 proto-oncogene, ETS transcription factor.
    
 0.950
EP300
E1A binding protein p300.
    
 0.922
ALAS2
5-aminolevulinate synthase.
   
 
 0.899
LDB1
LIM domain binding 1.
    
 0.891
GFI1B
Growth factor independent 1B transcriptional repressor.
   
 0.880
NKX2-5
NK2 homeobox 5.
   
 0.880
ZFPM2
Zinc finger protein, FOG family member 2.
    
 0.866
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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