STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H0VEP5_CAVPOCalponin-homology (CH) domain-containing protein. (457 aa)    
Predicted Functional Partners:
EFCAB6
EF-hand calcium binding domain 6.
   
  0.789
DNAI1
Dynein axonemal intermediate chain 1.
   
  
 0.747
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
   
 0.734
CCDC40
Coiled-coil domain containing 40.
    
 0.672
CFAP54
Cilia and flagella associated protein 54.
   
 
 0.657
SPAG17
Sperm associated antigen 17.
    
 
 0.632
CIB4
Calcium and integrin binding family member 4.
    
 0.628
LRRC40
Leucine rich repeat containing 40.
    
 
 0.619
ADK
Adenosine kinase.
    
 
 0.591
TTC21A
Tetratricopeptide repeat domain 21A.
   
 
 0.580
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.