PSMD11 protein (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PSMD11

Proteasome 26S subunit, non-ATPase 11. (422 aa)

Predicted Functional Partners:

PSMB1

0.999

PSMD13

0.999

PSMC4

0.999

PSMD6

0.999

KATNAL2

0.999

PSMC6

0.999

PSMD8

0.999

PSMD7

0.999

PSMC5

0.999

PSMA5

0.999

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	PSMA5	ENSCPOP00000007328	ENSCPOP00000012309	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome subunit alpha type.	0.894
KATNAL2	PSMB1	ENSCPOP00000007328	ENSCPOP00000001071	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome subunit beta.	0.894
KATNAL2	PSMC4	ENSCPOP00000007328	ENSCPOP00000003561	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.962
KATNAL2	PSMC5	ENSCPOP00000007328	ENSCPOP00000010226	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.472
KATNAL2	PSMC6	ENSCPOP00000007328	ENSCPOP00000008506	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.	0.962
KATNAL2	PSMD11	ENSCPOP00000007328	ENSCPOP00000008795	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, non-ATPase 11.	0.999
KATNAL2	PSMD13	ENSCPOP00000007328	ENSCPOP00000003243	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, non-ATPase 13.	0.999
KATNAL2	PSMD6	ENSCPOP00000007328	ENSCPOP00000005556	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, non-ATPase 6.	0.999
KATNAL2	PSMD7	ENSCPOP00000007328	ENSCPOP00000009979	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, non-ATPase 7.	0.883
KATNAL2	PSMD8	ENSCPOP00000007328	ENSCPOP00000009895	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome 26S subunit, non-ATPase 8.	0.993
PSMA5	KATNAL2	ENSCPOP00000012309	ENSCPOP00000007328	Proteasome subunit alpha type.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.894
PSMA5	PSMB1	ENSCPOP00000012309	ENSCPOP00000001071	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
PSMA5	PSMC4	ENSCPOP00000012309	ENSCPOP00000003561	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.999
PSMA5	PSMC5	ENSCPOP00000012309	ENSCPOP00000010226	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.999
PSMA5	PSMC6	ENSCPOP00000012309	ENSCPOP00000008506	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.	0.999
PSMA5	PSMD11	ENSCPOP00000012309	ENSCPOP00000008795	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 11.	0.999
PSMA5	PSMD13	ENSCPOP00000012309	ENSCPOP00000003243	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 13.	0.999
PSMA5	PSMD6	ENSCPOP00000012309	ENSCPOP00000005556	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 6.	0.999
PSMA5	PSMD7	ENSCPOP00000012309	ENSCPOP00000009979	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 7.	0.999
PSMA5	PSMD8	ENSCPOP00000012309	ENSCPOP00000009895	Proteasome subunit alpha type.	Proteasome 26S subunit, non-ATPase 8.	0.999