STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL4A2Collagen type IV alpha 2 chain. (1479 aa)    
Predicted Functional Partners:
COL4A1
Collagen type IV alpha 1 chain.
  
0.999
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
     
 0.918
COL4A5
Collagen type IV alpha 5 chain.
  
0.894
COL14A1
Collagen type XIV alpha 1 chain.
  
0.835
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.832
ITGA5
Integrin subunit alpha 5; Belongs to the integrin alpha chain family.
    
 0.830
ITGB8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.830
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
    
 0.825
H0W5D3_CAVPO
Uncharacterized protein.
   
0.825
COL12A1
Collagen type XII alpha 1 chain.
   
0.820
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.