STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cdc40WD_REPEATS_REGION domain-containing protein. (579 aa)    
Predicted Functional Partners:
SLU7
SLU7 homolog, splicing factor.
   
 0.985
DHX38
DEAH-box helicase 38.
   
 0.985
SYF2
SYF2 pre-mRNA splicing factor.
    
 0.983
YJU2
YJU2 splicing factor homolog.
    
 0.980
CWC25
CWC25 spliceosome associated protein homolog.
    
 0.980
DHX15
DEAH-box helicase 15.
    
 0.977
DHX16
DEAH-box helicase 16.
   
 0.977
ENSCPOP00000029996
Uncharacterized protein.
   
 0.975
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.973
CCDC12
Coiled-coil domain containing 12.
    
  0.970
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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