STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRBA1KRAB-A domain containing 1. (1046 aa)    
Predicted Functional Partners:
LRRC61
Leucine rich repeat containing 61.
    
 
 0.519
BARD1
BRCA1 associated RING domain 1.
    
  0.506
H0V4A5_CAVPO
Uncharacterized protein.
    
  0.500
Trim28
Uncharacterized protein.
    
  0.500
CHGB
Chromogranin B.
  
 
   0.490
SON
SON DNA binding protein.
  
 
  0.480
TCOF1
Treacle ribosome biogenesis factor 1.
  
 
  0.473
TRIM33
Tripartite motif containing 33.
    
  0.467
NME8
NME/NM23 family member 8.
    
 0.466
YTHDC2
YTH domain containing 2.
    
  0.451
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.