STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IRX5Iroquois homeobox 5. (477 aa)    
Predicted Functional Partners:
IRX3
Iroquois homeobox 3.
  
  
0.906
SRF
Serum response factor.
   
 
 0.774
PBX1
PBX homeobox 1.
    
0.688
PBX2
PBX homeobox 2.
    
0.688
PBX3
PBX homeobox 3.
    
0.688
TSHZ3
Teashirt zinc finger homeobox 3.
    
 0.656
Hhex
Homeobox domain-containing protein.
    
 
 0.609
DLX1
Distal-less homeobox 1.
   
 
 0.555
TSHZ1
Teashirt zinc finger homeobox 1.
    
 0.553
DLX2
Distal-less homeobox 2.
   
 
 0.536
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.