STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF394Zinc finger protein 394. (546 aa)    
Predicted Functional Partners:
ZSCAN20
Zinc finger and SCAN domain containing 20.
  
 
  
0.684
SCAND1
SCAN domain containing 1.
    
  
0.664
ZSCAN29
Zinc finger and SCAN domain containing 29.
    
  
0.653
ZNF397
Zinc finger protein 397.
  
 
  
0.624
USP19
Ubiquitin specific peptidase 19.
      
 0.552
BARD1
BRCA1 associated RING domain 1.
    
  0.506
H0V4A5_CAVPO
Uncharacterized protein.
    
  0.479
Trim28
Uncharacterized protein.
    
  0.479
DUSP22
Dual specificity phosphatase 22; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
    
 
 0.478
LIN28B
Lin-28 homolog B.
    
 
 0.477
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.