STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JMJD4Jumonji domain containing 4. (425 aa)    
Predicted Functional Partners:
ETF1
Eukaryotic translation termination factor 1.
    
 
 0.664
ALKBH1
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.574
HSPBAP1
HSPB1 associated protein 1.
      
 0.555
KDM8
Lysine demethylase 8.
      
 0.553
ALKBH5
AlkB homolog 5, RNA demethylase.
   
  
 0.553
RIOX1
Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase.
      
 0.553
ALKBH4
AlkB homolog 4, lysine demethylase.
   
  
 0.547
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.538
ALKBH6
AlkB homolog 6.
      
 0.515
OGFOD2
2-oxoglutarate and iron dependent oxygenase domain containing 2.
   
  
 0.502
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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