VSTM2B protein (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VSTM2B

V-set and transmembrane domain containing 2B. (285 aa)

Predicted Functional Partners:

TNFAIP8L3

0.770

LMCD1

0.711

FXYD7

0.569

HPSE

0.563

CHODL

0.563

DOC2B

0.554

WHRN

0.552

CPNE4

0.525

LIPG

0.518

Dhfr

0.440

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHODL	VSTM2B	ENSCPOP00000004884	ENSCPOP00000015714	Chondrolectin.	V-set and transmembrane domain containing 2B.	0.563
CPNE4	FXYD7	ENSCPOP00000003261	ENSCPOP00000023834	Copine 4.	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	0.417
CPNE4	TNFAIP8L3	ENSCPOP00000003261	ENSCPOP00000024353	Copine 4.	TNF alpha induced protein 8 like 3.	0.433
CPNE4	VSTM2B	ENSCPOP00000003261	ENSCPOP00000015714	Copine 4.	V-set and transmembrane domain containing 2B.	0.525
DOC2B	TNFAIP8L3	ENSCPOP00000019259	ENSCPOP00000024353	Double C2 domain beta.	TNF alpha induced protein 8 like 3.	0.464
DOC2B	VSTM2B	ENSCPOP00000019259	ENSCPOP00000015714	Double C2 domain beta.	V-set and transmembrane domain containing 2B.	0.554
Dhfr	VSTM2B	ENSCPOP00000028779	ENSCPOP00000015714	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	V-set and transmembrane domain containing 2B.	0.440
FXYD7	CPNE4	ENSCPOP00000023834	ENSCPOP00000003261	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	Copine 4.	0.417
FXYD7	LIPG	ENSCPOP00000023834	ENSCPOP00000007985	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	Lipase G, endothelial type.	0.432
FXYD7	TNFAIP8L3	ENSCPOP00000023834	ENSCPOP00000024353	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	TNF alpha induced protein 8 like 3.	0.509
FXYD7	VSTM2B	ENSCPOP00000023834	ENSCPOP00000015714	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	V-set and transmembrane domain containing 2B.	0.569
HPSE	VSTM2B	ENSCPOP00000001678	ENSCPOP00000015714	Heparanase.	V-set and transmembrane domain containing 2B.	0.563
LIPG	FXYD7	ENSCPOP00000007985	ENSCPOP00000023834	Lipase G, endothelial type.	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	0.432
LIPG	LMCD1	ENSCPOP00000007985	ENSCPOP00000028603	Lipase G, endothelial type.	LIM and cysteine rich domains 1.	0.427
LIPG	TNFAIP8L3	ENSCPOP00000007985	ENSCPOP00000024353	Lipase G, endothelial type.	TNF alpha induced protein 8 like 3.	0.456
LIPG	VSTM2B	ENSCPOP00000007985	ENSCPOP00000015714	Lipase G, endothelial type.	V-set and transmembrane domain containing 2B.	0.518
LMCD1	LIPG	ENSCPOP00000028603	ENSCPOP00000007985	LIM and cysteine rich domains 1.	Lipase G, endothelial type.	0.427
LMCD1	TNFAIP8L3	ENSCPOP00000028603	ENSCPOP00000024353	LIM and cysteine rich domains 1.	TNF alpha induced protein 8 like 3.	0.642
LMCD1	VSTM2B	ENSCPOP00000028603	ENSCPOP00000015714	LIM and cysteine rich domains 1.	V-set and transmembrane domain containing 2B.	0.711
TNFAIP8L3	CPNE4	ENSCPOP00000024353	ENSCPOP00000003261	TNF alpha induced protein 8 like 3.	Copine 4.	0.433