STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100734246G_PROTEIN_RECEP_F3_4 domain-containing protein. (791 aa)    
Predicted Functional Partners:
WDR90
WD repeat domain 90.
    
   0.651
NME8
NME/NM23 family member 8.
    
 
 0.527
KALRN
Kalirin RhoGEF kinase.
    
  0.512
TRIO
Trio Rho guanine nucleotide exchange factor.
    
  0.512
EFHB
EF-hand domain family member B.
    
   0.506
GNG13
G protein subunit gamma 13.
    
 0.473
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.470
GNB3
G protein subunit beta 3.
    
  0.466
HOMER1
Homer scaffold protein 1.
    
  0.466
GABBR2
Gamma-aminobutyric acid type B receptor subunit 2.
    
 0.456
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.