STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MycbpUncharacterized protein. (103 aa)    
Predicted Functional Partners:
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.944
WDR90
WD repeat domain 90.
    
   0.850
MYCBPAP
MYCBP associated protein.
    
 
 0.820
PGK1
Phosphoglycerate kinase.
    
 
 0.753
CCDC189
Coiled-coil domain containing 189.
    
 
 0.721
SPAG17
Sperm associated antigen 17.
    
 
 0.686
CFAP74
Cilia and flagella associated protein 74.
    
 
 0.683
Lrrc72
Uncharacterized protein.
    
 
 0.673
POLR3C
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.670
SPATA4
Spermatogenesis associated 4.
    
   0.670
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.