STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD6Programmed cell death 6. (189 aa)    
Predicted Functional Partners:
Pdcd6ip
BRO1 domain-containing protein.
    
 
 0.849
SEC31A
SEC31 homolog A, COPII coat complex component.
    
 0.839
HEBP2
Heme binding protein 2.
    
 
 0.827
H0V7Z8_CAVPO
Uncharacterized protein.
    
 0.798
KLHL12
Kelch like family member 12.
    
 0.782
SEC31B
SEC31 homolog B, COPII coat complex component.
    
 
 0.759
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.638
KLHL3
Kelch like family member 3.
    
 0.634
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.616
CAPN6
Calpain 6; Belongs to the peptidase C2 family.
   
 0.598
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.