STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL8A1Collagen type VIII alpha 1 chain. (744 aa)    
Predicted Functional Partners:
COL8A2
Collagen type VIII alpha 2 chain.
  
0.804
ENSCPOP00000022922
Collagen IV NC1 domain-containing protein.
 
  
  0.727
COL6A2
Collagen type VI alpha 2 chain.
  
0.722
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
    
 0.703
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.691
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.672
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.664
TGFBR1
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.658
TEP1
Telomerase associated protein 1.
    
 0.652
COL1A2
Collagen type I alpha 2 chain.
  
 
0.648
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.