STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYOD1Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (318 aa)    
Predicted Functional Partners:
TCF3
Transcription factor 3.
    
 0.941
EP300
E1A binding protein p300.
    
 
 0.923
ENSCPOP00000024615
Bromo domain-containing protein.
    
 
 0.899
TCF4
Transcription factor 4.
    
 0.887
TCF12
Transcription factor 12.
    
 0.887
ID1
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.853
MEF2D
Myocyte enhancer factor 2D.
    
 0.842
MEF2A
Myocyte enhancer factor 2A.
    
 0.834
TBP
TATA-box binding protein.
    
 0.834
TBPL2
TATA-box binding protein like 2.
    
 0.819
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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