STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100726034Uncharacterized protein. (164 aa)    
Predicted Functional Partners:
Pdcd6ip
BRO1 domain-containing protein.
    
 0.986
PTPN23
Protein tyrosine phosphatase non-receptor type 23.
    
 0.977
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.892
Vps4a
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.882
CHMP2A
Charged multivesicular body protein 2A.
     
 0.859
BROX
BRO1 domain and CAAX motif containing.
    
 0.856
RHPN1
Rhophilin Rho GTPase binding protein 1.
    
 0.855
RHPN2
Rhophilin Rho GTPase binding protein 2.
    
 0.855
CHMP6
Charged multivesicular body protein 6.
     
 0.848
CHMP5
Charged multivesicular body protein 5.
    
 0.841
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.