STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS50VPS50 subunit of EARP/GARPII complex. (936 aa)    
Predicted Functional Partners:
VPS51
VPS51 subunit of GARP complex.
    
 0.996
VPS53
VPS53 subunit of GARP complex.
    
 0.996
VPS52
VPS52 subunit of GARP complex.
   
 0.969
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 0.948
VPS54
VPS54 subunit of GARP complex.
   
 
 0.901
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 
 0.622
GAK
Cyclin G associated kinase.
   
  
 0.594
CCDC186
Coiled-coil domain containing 186.
      
 0.581
DYM
Dymeclin.
   
  
 0.579
CCDC138
Coiled-coil domain containing 138.
      
 0.558
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.