STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXC4Homeobox C4. (264 aa)    
Predicted Functional Partners:
HOXC5
Homeobox C5.
   
 
0.931
HOXC6
Homeobox C6.
  
 
0.927
HOXB5
Homeobox B5.
   
 
0.925
HOXB6
Homeobox B6.
   
 
0.854
HOXA6
Homeobox A6.
   
 
0.789
HOXD4
Homeobox D4.
  
 
0.761
PBX3
PBX homeobox 3.
    
 0.756
PBX1
PBX homeobox 1.
    
 0.745
PBX2
PBX homeobox 2.
    
 0.692
HOXC10
Homeobox C10.
   
 
0.653
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.