RAB34 protein (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RAB34

RAB34, member RAS oncogene family. (259 aa)

Predicted Functional Partners:

RIC1

0.889

GDI2

0.873

GDI1

0.873

ARL1

0.850

VPS52

0.849

COG6

0.831

Cog8

0.820

VPS53

0.816

BICD1

0.804

BICD2

0.804

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL1	COG6	ENSCPOP00000014990	ENSCPOP00000002969	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.886
ARL1	Cog8	ENSCPOP00000014990	ENSCPOP00000003346	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.845
ARL1	GDI1	ENSCPOP00000014990	ENSCPOP00000028289	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.568
ARL1	GDI2	ENSCPOP00000014990	ENSCPOP00000012110	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.568
ARL1	RAB34	ENSCPOP00000014990	ENSCPOP00000025981	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	RAB34, member RAS oncogene family.	0.850
ARL1	RIC1	ENSCPOP00000014990	ENSCPOP00000012088	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	RIC1 homolog, RAB6A GEF complex partner 1.	0.799
ARL1	VPS52	ENSCPOP00000014990	ENSCPOP00000032052	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	VPS52 subunit of GARP complex.	0.751
ARL1	VPS53	ENSCPOP00000014990	ENSCPOP00000023815	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	VPS53 subunit of GARP complex.	0.802
BICD1	BICD2	ENSCPOP00000001403	ENSCPOP00000028800	BICD cargo adaptor 1.	BICD cargo adaptor 2.	0.752
BICD1	RAB34	ENSCPOP00000001403	ENSCPOP00000025981	BICD cargo adaptor 1.	RAB34, member RAS oncogene family.	0.804
BICD2	BICD1	ENSCPOP00000028800	ENSCPOP00000001403	BICD cargo adaptor 2.	BICD cargo adaptor 1.	0.752
BICD2	RAB34	ENSCPOP00000028800	ENSCPOP00000025981	BICD cargo adaptor 2.	RAB34, member RAS oncogene family.	0.804
COG6	ARL1	ENSCPOP00000002969	ENSCPOP00000014990	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	0.886
COG6	Cog8	ENSCPOP00000002969	ENSCPOP00000003346	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.999
COG6	RAB34	ENSCPOP00000002969	ENSCPOP00000025981	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	RAB34, member RAS oncogene family.	0.831
COG6	RIC1	ENSCPOP00000002969	ENSCPOP00000012088	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	RIC1 homolog, RAB6A GEF complex partner 1.	0.821
COG6	VPS52	ENSCPOP00000002969	ENSCPOP00000032052	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	VPS52 subunit of GARP complex.	0.877
COG6	VPS53	ENSCPOP00000002969	ENSCPOP00000023815	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	VPS53 subunit of GARP complex.	0.870
Cog8	ARL1	ENSCPOP00000003346	ENSCPOP00000014990	Uncharacterized protein.	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	0.845
Cog8	COG6	ENSCPOP00000003346	ENSCPOP00000002969	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.999