STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTP4A1Protein tyrosine phosphatase 4A1. (173 aa)    
Predicted Functional Partners:
Cnnm3
Uncharacterized protein.
    
 
 0.855
CNNM2
Cyclin and CBS domain divalent metal cation transport mediator 2.
    
 
 0.783
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.753
Spink2
Kazal-like domain-containing protein.
   
    0.591
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.589
CNNM4
Cyclin and CBS domain divalent metal cation transport mediator 4.
    
 
 0.589
AUP1
AUP1 lipid droplet regulating VLDL assembly factor.
    
   0.539
Phf3
TFIIS central domain-containing protein.
 
    
 0.457
CIRBP
Cold inducible RNA binding protein.
   
  
 0.416
CSNK2B
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
   
 
  0.410
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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