STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1orf189Chromosome 1 open reading frame 189. (105 aa)    
Predicted Functional Partners:
WDR90
WD repeat domain 90.
    
   0.950
C1orf194
Chromosome 1 open reading frame 194.
   
   0.864
TEKT3
Tektin 3.
    
   0.860
EFHB
EF-hand domain family member B.
    
   0.860
C1orf158
Chromosome 1 open reading frame 158.
    
   0.860
CFAP45
Cilia and flagella associated protein 45.
    
   0.860
TEKT2
Tektin 2.
    
   0.860
C9orf135
Chromosome 9 open reading frame 135.
    
   0.860
MNS1
Meiosis specific nuclear structural 1.
    
   0.860
RIBC2
RIB43A domain with coiled-coils 2.
    
   0.860
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.