STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZKSCAN5Zinc finger with KRAB and SCAN domains 5. (826 aa)    
Predicted Functional Partners:
ZSCAN20
Zinc finger and SCAN domain containing 20.
  
  
0.636
ARPC1A
Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
      
 0.611
DHX16
DEAH-box helicase 16.
    
 
 0.599
CNOT10
CCR4-NOT transcription complex subunit 10.
      
 0.556
ZNF232
Zinc finger protein 232.
    
  
0.556
H0V4A5_CAVPO
Uncharacterized protein.
    
 0.534
Trim28
Uncharacterized protein.
    
 0.534
BARD1
BRCA1 associated RING domain 1.
    
  0.506
TRIM33
Tripartite motif containing 33.
    
 0.500
MRPS5
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.496
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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