STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX41DEAD-box helicase 41. (622 aa)    
Predicted Functional Partners:
NKAPL
NFKB activating protein like.
    
  0.869
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 0.863
TRIM21
Tripartite motif containing 21.
    
 0.799
DHX36
DEAH-box helicase 36.
   
 0.793
Trim58
Uncharacterized protein.
    
 0.775
DHX38
DEAH-box helicase 38.
   
 0.763
SRRM1
Serine and arginine repetitive matrix 1.
    
  0.760
DHX9
DExH-box helicase 9.
    
 0.754
DHX29
ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.
   
 0.746
ALYREF
Aly/REF export factor.
   
  0.746
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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