STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARMC7Armadillo repeat containing 7. (198 aa)    
Predicted Functional Partners:
RBM48
RNA binding motif protein 48.
  
 
 
 0.986
GPKOW
G-patch domain and KOW motifs.
   
   0.913
SCNM1
Sodium channel modifier 1.
    
 
 0.912
CRIPT
CXXC repeat containing interactor of PDZ3 domain.
    
 
 0.910
SF3B3
Splicing factor 3b subunit 3.
    
   0.907
CDC5L
Cell division cycle 5 like.
    
   0.907
PLRG1
Pleiotropic regulator 1.
    
   0.907
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
   0.907
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
   0.907
CWC15
CWC15 spliceosome associated protein homolog.
    
   0.907
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.