STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS52VPS52 subunit of GARP complex. (723 aa)    
Predicted Functional Partners:
VPS54
VPS54 subunit of GARP complex.
    
 0.999
VPS51
VPS51 subunit of GARP complex.
   
 0.999
VPS53
VPS53 subunit of GARP complex.
   
 0.999
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 0.969
RNF41
Ring finger protein 41.
    
 
 0.916
COG5
Component of oligomeric golgi complex 5.
   
 
 0.905
STX6
Syntaxin 6; Belongs to the syntaxin family.
    
 0.890
RAB6A
RAB6A, member RAS oncogene family.
    
 0.881
RAB6B
RAB6B, member RAS oncogene family.
    
 0.881
Cog8
Uncharacterized protein.
   
 0.878
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.