STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOJ62394.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
AOJ62393.1
Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
AOJ62395.1
Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.443
AOJ65137.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.431
AOJ62306.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
Your Current Organism:
Burkholderia ubonensis
NCBI taxonomy Id: 101571
Other names: B. ubonensis, Burkholderia sp. 17540, Burkholderia sp. A1301, Burkholderia ubonensis corrig. Yabuuchi et al. 2000, Burkholderia uboniae, CCUG 48852, CIP 107078, DSM 17311, GTC P3-415, NCTC 13147, strain EY 3383
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.