ENSODEP00000000020 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000000020

annotation not available (173 aa)

Predicted Functional Partners:

ENSODEP00000006833

0.921

GSTM4

0.920

ENSODEP00000006364

0.920

ENSODEP00000007002

0.920

GSTM2

0.920

ENSODEP00000007568

0.920

EPHX1

0.916

ENSODEP00000011890

0.910

GPX3

0.906

GPX6

0.906

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000020	ENSODEP00000006364	ENSODEP00000000020	ENSODEP00000006364	annotation not available	annotation not available	0.920
ENSODEP00000000020	ENSODEP00000006833	ENSODEP00000000020	ENSODEP00000006833	annotation not available	annotation not available	0.921
ENSODEP00000000020	ENSODEP00000007002	ENSODEP00000000020	ENSODEP00000007002	annotation not available	annotation not available	0.920
ENSODEP00000000020	ENSODEP00000007568	ENSODEP00000000020	ENSODEP00000007568	annotation not available	annotation not available	0.920
ENSODEP00000000020	ENSODEP00000011890	ENSODEP00000000020	ENSODEP00000011890	annotation not available	annotation not available	0.910
ENSODEP00000000020	EPHX1	ENSODEP00000000020	ENSODEP00000020084	annotation not available	Epoxide hydrolase 1.	0.916
ENSODEP00000000020	GPX3	ENSODEP00000000020	ENSODEP00000010818	annotation not available	Glutathione peroxidase 3.	0.906
ENSODEP00000000020	GPX6	ENSODEP00000000020	ENSODEP00000011024	annotation not available	Glutathione peroxidase 6.	0.906
ENSODEP00000000020	GSTM2	ENSODEP00000000020	ENSODEP00000007019	annotation not available	Glutathione S-transferase mu 2.	0.920
ENSODEP00000000020	GSTM4	ENSODEP00000000020	ENSODEP00000006362	annotation not available	Glutathione S-transferase mu 4.	0.920
ENSODEP00000006364	ENSODEP00000000020	ENSODEP00000006364	ENSODEP00000000020	annotation not available	annotation not available	0.920
ENSODEP00000006364	ENSODEP00000011890	ENSODEP00000006364	ENSODEP00000011890	annotation not available	annotation not available	0.848
ENSODEP00000006364	EPHX1	ENSODEP00000006364	ENSODEP00000020084	annotation not available	Epoxide hydrolase 1.	0.854
ENSODEP00000006364	GPX3	ENSODEP00000006364	ENSODEP00000010818	annotation not available	Glutathione peroxidase 3.	0.848
ENSODEP00000006364	GPX6	ENSODEP00000006364	ENSODEP00000011024	annotation not available	Glutathione peroxidase 6.	0.847
ENSODEP00000006833	ENSODEP00000000020	ENSODEP00000006833	ENSODEP00000000020	annotation not available	annotation not available	0.921
ENSODEP00000006833	ENSODEP00000011890	ENSODEP00000006833	ENSODEP00000011890	annotation not available	annotation not available	0.848
ENSODEP00000006833	EPHX1	ENSODEP00000006833	ENSODEP00000020084	annotation not available	Epoxide hydrolase 1.	0.854
ENSODEP00000006833	GPX3	ENSODEP00000006833	ENSODEP00000010818	annotation not available	Glutathione peroxidase 3.	0.848
ENSODEP00000006833	GPX6	ENSODEP00000006833	ENSODEP00000011024	annotation not available	Glutathione peroxidase 6.	0.847