Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VAPBVAMP associated protein B and C. (230 aa)    
Predicted Functional Partners:
VAPA
VAMP associated protein A.
   
 0.999
STARD3
StAR related lipid transfer domain containing 3.
    
 0.997
OSBP
Oxysterol binding protein.
    
 
 0.987
OSBPL9
Oxysterol binding protein like 9.
   
 
 0.980
RMDN3
Regulator of microtubule dynamics 3.
    
 
 0.980
OSBP2
Oxysterol binding protein 2.
    
 
 0.974
Pitpnm1
Phosphatidylinositol transfer protein membrane associated 1.
    
 
 0.971
ATF6
Activating transcription factor 6.
     
 0.970
USP20
Ubiquitin specific peptidase 20.
   
 
 0.967
OSBPL3
Oxysterol binding protein like 3.
    
 
 0.966
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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