Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSTM2AV-set and transmembrane domain containing 2A. (230 aa)    
Predicted Functional Partners:
ENSODEP00000002392
annotation not available
    
   0.726
ENSODEP00000002626
annotation not available
    
   0.726
TMEM79
Transmembrane protein 79.
      
 0.550
PTDSS1
Phosphatidylserine synthase 1.
      
 0.546
ENSODEP00000006683
annotation not available
      
 0.532
PKIA
cAMP-dependent protein kinase inhibitor alpha.
      
 0.461
PDZD3
PDZ domain containing 3.
      
 0.460
PPP2R2C
Protein phosphatase 2 regulatory subunit Bgamma.
      
 0.460
CNTN4
Contactin 4.
      
 0.458
ENSODEP00000011244
annotation not available
      
 0.457
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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