ENSODEP00000000055 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000000055

annotation not available (220 aa)

Predicted Functional Partners:

HSD17B12

0.966

ENSODEP00000007383

0.960

ENSODEP00000011961

0.960

ENSODEP00000026222

0.960

ENSODEP00000026800

0.960

HACD1

0.959

HSD17B3

0.929

ELOVL4

0.909

ELOVL2

0.909

ENSODEP00000021773

0.892

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOVL2	ELOVL4	ENSODEP00000007646	ENSODEP00000006124	ELOVL fatty acid elongase 2.	ELOVL fatty acid elongase 4.	0.864
ELOVL2	ENSODEP00000000055	ENSODEP00000007646	ENSODEP00000000055	ELOVL fatty acid elongase 2.	annotation not available	0.909
ELOVL2	ENSODEP00000007383	ENSODEP00000007646	ENSODEP00000007383	ELOVL fatty acid elongase 2.	annotation not available	0.950
ELOVL2	ENSODEP00000011961	ENSODEP00000007646	ENSODEP00000011961	ELOVL fatty acid elongase 2.	annotation not available	0.950
ELOVL2	ENSODEP00000021773	ENSODEP00000007646	ENSODEP00000021773	ELOVL fatty acid elongase 2.	annotation not available	0.788
ELOVL2	ENSODEP00000026222	ENSODEP00000007646	ENSODEP00000026222	ELOVL fatty acid elongase 2.	annotation not available	0.950
ELOVL2	ENSODEP00000026800	ENSODEP00000007646	ENSODEP00000026800	ELOVL fatty acid elongase 2.	annotation not available	0.950
ELOVL2	HACD1	ENSODEP00000007646	ENSODEP00000016515	ELOVL fatty acid elongase 2.	3-hydroxyacyl-CoA dehydratase 1.	0.976
ELOVL2	HSD17B12	ENSODEP00000007646	ENSODEP00000022665	ELOVL fatty acid elongase 2.	Hydroxysteroid 17-beta dehydrogenase 12.	0.978
ELOVL2	HSD17B3	ENSODEP00000007646	ENSODEP00000021576	ELOVL fatty acid elongase 2.	Hydroxysteroid 17-beta dehydrogenase 3.	0.866
ELOVL4	ELOVL2	ENSODEP00000006124	ENSODEP00000007646	ELOVL fatty acid elongase 4.	ELOVL fatty acid elongase 2.	0.864
ELOVL4	ENSODEP00000000055	ENSODEP00000006124	ENSODEP00000000055	ELOVL fatty acid elongase 4.	annotation not available	0.909
ELOVL4	ENSODEP00000007383	ENSODEP00000006124	ENSODEP00000007383	ELOVL fatty acid elongase 4.	annotation not available	0.950
ELOVL4	ENSODEP00000011961	ENSODEP00000006124	ENSODEP00000011961	ELOVL fatty acid elongase 4.	annotation not available	0.950
ELOVL4	ENSODEP00000021773	ENSODEP00000006124	ENSODEP00000021773	ELOVL fatty acid elongase 4.	annotation not available	0.788
ELOVL4	ENSODEP00000026222	ENSODEP00000006124	ENSODEP00000026222	ELOVL fatty acid elongase 4.	annotation not available	0.950
ELOVL4	ENSODEP00000026800	ENSODEP00000006124	ENSODEP00000026800	ELOVL fatty acid elongase 4.	annotation not available	0.950
ELOVL4	HACD1	ENSODEP00000006124	ENSODEP00000016515	ELOVL fatty acid elongase 4.	3-hydroxyacyl-CoA dehydratase 1.	0.977
ELOVL4	HSD17B12	ENSODEP00000006124	ENSODEP00000022665	ELOVL fatty acid elongase 4.	Hydroxysteroid 17-beta dehydrogenase 12.	0.982
ELOVL4	HSD17B3	ENSODEP00000006124	ENSODEP00000021576	ELOVL fatty acid elongase 4.	Hydroxysteroid 17-beta dehydrogenase 3.	0.915