STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000000068annotation not available (288 aa)    
Predicted Functional Partners:
UBE2H
Ubiquitin conjugating enzyme E2 H.
   
 
 0.905
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
   
 
 0.789
ENSODEP00000019005
annotation not available
    
 
 0.772
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.747
UBR2
Ubiquitin protein ligase E3 component n-recognin 2.
   
 
 0.747
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.734
C1QTNF12
C1q and TNF related 12.
    
 
 0.734
REV1
REV1 DNA directed polymerase.
      
 0.713
SPATA5
Spermatogenesis associated 5.
    
 
 0.700
VCP
Valosin containing protein.
    
 
 0.700
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.