ENSODEP00000000071 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000000071

annotation not available (345 aa)

Predicted Functional Partners:

HSPA4

0.896

ENSODEP00000027044

0.824

ENSODEP00000027048

0.824

HSPA1L

0.812

ENSODEP00000000628

0.803

ENSODEP00000002462

0.803

ENSODEP00000003391

0.803

ENSODEP00000004238

0.803

ENSODEP00000004341

0.803

Hspa8

0.803

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000071	ENSODEP00000000628	ENSODEP00000000071	ENSODEP00000000628	annotation not available	annotation not available	0.803
ENSODEP00000000071	ENSODEP00000002462	ENSODEP00000000071	ENSODEP00000002462	annotation not available	annotation not available	0.803
ENSODEP00000000071	ENSODEP00000003391	ENSODEP00000000071	ENSODEP00000003391	annotation not available	annotation not available	0.803
ENSODEP00000000071	ENSODEP00000004238	ENSODEP00000000071	ENSODEP00000004238	annotation not available	annotation not available	0.803
ENSODEP00000000071	ENSODEP00000004341	ENSODEP00000000071	ENSODEP00000004341	annotation not available	annotation not available	0.803
ENSODEP00000000071	ENSODEP00000027044	ENSODEP00000000071	ENSODEP00000027044	annotation not available	annotation not available	0.824
ENSODEP00000000071	ENSODEP00000027048	ENSODEP00000000071	ENSODEP00000027048	annotation not available	annotation not available	0.824
ENSODEP00000000071	HSPA1L	ENSODEP00000000071	ENSODEP00000026989	annotation not available	Heat shock protein family A (Hsp70) member 1 like.	0.812
ENSODEP00000000071	HSPA4	ENSODEP00000000071	ENSODEP00000012828	annotation not available	Heat shock protein family A (Hsp70) member 4.	0.896
ENSODEP00000000071	Hspa8	ENSODEP00000000071	ENSODEP00000008236	annotation not available	annotation not available	0.803
ENSODEP00000000628	ENSODEP00000000071	ENSODEP00000000628	ENSODEP00000000071	annotation not available	annotation not available	0.803
ENSODEP00000000628	ENSODEP00000004238	ENSODEP00000000628	ENSODEP00000004238	annotation not available	annotation not available	0.857
ENSODEP00000000628	ENSODEP00000027044	ENSODEP00000000628	ENSODEP00000027044	annotation not available	annotation not available	0.904
ENSODEP00000000628	ENSODEP00000027048	ENSODEP00000000628	ENSODEP00000027048	annotation not available	annotation not available	0.904
ENSODEP00000000628	HSPA1L	ENSODEP00000000628	ENSODEP00000026989	annotation not available	Heat shock protein family A (Hsp70) member 1 like.	0.926
ENSODEP00000000628	HSPA4	ENSODEP00000000628	ENSODEP00000012828	annotation not available	Heat shock protein family A (Hsp70) member 4.	0.970
ENSODEP00000002462	ENSODEP00000000071	ENSODEP00000002462	ENSODEP00000000071	annotation not available	annotation not available	0.803
ENSODEP00000002462	ENSODEP00000027044	ENSODEP00000002462	ENSODEP00000027044	annotation not available	annotation not available	0.904
ENSODEP00000002462	ENSODEP00000027048	ENSODEP00000002462	ENSODEP00000027048	annotation not available	annotation not available	0.904
ENSODEP00000002462	HSPA1L	ENSODEP00000002462	ENSODEP00000026989	annotation not available	Heat shock protein family A (Hsp70) member 1 like.	0.926