LRFN5 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LRFN5

Leucine rich repeat and fibronectin type III domain containing 5. (719 aa)

Predicted Functional Partners:

NTNG1

0.869

ENSODEP00000025351

0.841

DLG4

0.831

PTPRS

0.811

DLG2

0.782

DLG1

0.782

RSPO2

0.775

PTPRF

0.765

PTPRD

0.746

Tonsl

0.745

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLG1	DLG4	ENSODEP00000017205	ENSODEP00000023551	Discs large MAGUK scaffold protein 1.	Discs large MAGUK scaffold protein 4.	0.992
DLG1	ENSODEP00000025351	ENSODEP00000017205	ENSODEP00000025351	Discs large MAGUK scaffold protein 1.	annotation not available	0.767
DLG1	LRFN5	ENSODEP00000017205	ENSODEP00000000072	Discs large MAGUK scaffold protein 1.	Leucine rich repeat and fibronectin type III domain containing 5.	0.782
DLG1	PTPRD	ENSODEP00000017205	ENSODEP00000021303	Discs large MAGUK scaffold protein 1.	Protein tyrosine phosphatase receptor type D.	0.590
DLG2	DLG4	ENSODEP00000005517	ENSODEP00000023551	Discs large MAGUK scaffold protein 2.	Discs large MAGUK scaffold protein 4.	0.992
DLG2	ENSODEP00000025351	ENSODEP00000005517	ENSODEP00000025351	Discs large MAGUK scaffold protein 2.	annotation not available	0.767
DLG2	LRFN5	ENSODEP00000005517	ENSODEP00000000072	Discs large MAGUK scaffold protein 2.	Leucine rich repeat and fibronectin type III domain containing 5.	0.782
DLG2	PTPRD	ENSODEP00000005517	ENSODEP00000021303	Discs large MAGUK scaffold protein 2.	Protein tyrosine phosphatase receptor type D.	0.590
DLG4	DLG1	ENSODEP00000023551	ENSODEP00000017205	Discs large MAGUK scaffold protein 4.	Discs large MAGUK scaffold protein 1.	0.992
DLG4	DLG2	ENSODEP00000023551	ENSODEP00000005517	Discs large MAGUK scaffold protein 4.	Discs large MAGUK scaffold protein 2.	0.992
DLG4	ENSODEP00000025351	ENSODEP00000023551	ENSODEP00000025351	Discs large MAGUK scaffold protein 4.	annotation not available	0.756
DLG4	LRFN5	ENSODEP00000023551	ENSODEP00000000072	Discs large MAGUK scaffold protein 4.	Leucine rich repeat and fibronectin type III domain containing 5.	0.831
DLG4	PTPRF	ENSODEP00000023551	ENSODEP00000004725	Discs large MAGUK scaffold protein 4.	Protein tyrosine phosphatase receptor type F.	0.445
DLG4	PTPRS	ENSODEP00000023551	ENSODEP00000021308	Discs large MAGUK scaffold protein 4.	Protein tyrosine phosphatase receptor type S.	0.435
ENSODEP00000025351	DLG1	ENSODEP00000025351	ENSODEP00000017205	annotation not available	Discs large MAGUK scaffold protein 1.	0.767
ENSODEP00000025351	DLG2	ENSODEP00000025351	ENSODEP00000005517	annotation not available	Discs large MAGUK scaffold protein 2.	0.767
ENSODEP00000025351	DLG4	ENSODEP00000025351	ENSODEP00000023551	annotation not available	Discs large MAGUK scaffold protein 4.	0.756
ENSODEP00000025351	LRFN5	ENSODEP00000025351	ENSODEP00000000072	annotation not available	Leucine rich repeat and fibronectin type III domain containing 5.	0.841
ENSODEP00000025351	NTNG1	ENSODEP00000025351	ENSODEP00000007293	annotation not available	Netrin G1.	0.931
ENSODEP00000025351	PTPRD	ENSODEP00000025351	ENSODEP00000021303	annotation not available	Protein tyrosine phosphatase receptor type D.	0.736