Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001008annotation not available (268 aa)    
Predicted Functional Partners:
ENSODEP00000005987
annotation not available
   
 
 0.867
ENSODEP00000016169
annotation not available
   
 
 0.867
FAM177A1
Family with sequence similarity 177 member A1.
    
   0.717
BTD
Biotinidase.
      
 0.600
TXNL1
Thioredoxin like 1.
      
 0.592
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
      
 0.581
AGPS
Alkylglycerone phosphate synthase.
      
 0.550
RTP2
Receptor transporter protein 2.
      
 0.535
ENSODEP00000002019
annotation not available
   
  
 0.482
LOC101584031
Dolichol-phosphate mannosyltransferase subunit 1-like.
   
  
 0.482
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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