STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001008annotation not available (268 aa)    
Predicted Functional Partners:
ENSODEP00000005987
annotation not available
   
 
 0.733
ENSODEP00000016169
annotation not available
   
 
 0.733
TXNL1
Thioredoxin like 1.
      
 0.459
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
      
 0.424
AGPS
Alkylglycerone phosphate synthase.
      
 0.408
AP5Z1
Adaptor related protein complex 5 subunit zeta 1.
      
 0.406
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.