ENSODEP00000001012 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000001012

annotation not available (105 aa)

Predicted Functional Partners:

ENSODEP00000004407

0.867

ENSODEP00000015751

0.867

TP53

0.834

ENSODEP00000000199

0.825

ENSODEP00000000355

0.825

ENSODEP00000013495

0.825

ENSODEP00000010730

0.811

ENSODEP00000011257

0.811

ENSODEP00000016835

0.811

ENSODEP00000025065

0.811

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000199	ENSODEP00000001012	ENSODEP00000000199	ENSODEP00000001012	annotation not available	annotation not available	0.825
ENSODEP00000000199	ENSODEP00000004407	ENSODEP00000000199	ENSODEP00000004407	annotation not available	annotation not available	0.993
ENSODEP00000000199	ENSODEP00000010730	ENSODEP00000000199	ENSODEP00000010730	annotation not available	annotation not available	0.977
ENSODEP00000000199	ENSODEP00000011257	ENSODEP00000000199	ENSODEP00000011257	annotation not available	annotation not available	0.977
ENSODEP00000000199	ENSODEP00000015751	ENSODEP00000000199	ENSODEP00000015751	annotation not available	annotation not available	0.996
ENSODEP00000000199	ENSODEP00000016835	ENSODEP00000000199	ENSODEP00000016835	annotation not available	annotation not available	0.977
ENSODEP00000000199	ENSODEP00000025065	ENSODEP00000000199	ENSODEP00000025065	annotation not available	annotation not available	0.977
ENSODEP00000000199	TP53	ENSODEP00000000199	ENSODEP00000024162	annotation not available	Tumor protein p53.	0.775
ENSODEP00000000355	ENSODEP00000001012	ENSODEP00000000355	ENSODEP00000001012	annotation not available	annotation not available	0.825
ENSODEP00000000355	ENSODEP00000004407	ENSODEP00000000355	ENSODEP00000004407	annotation not available	annotation not available	0.993
ENSODEP00000000355	ENSODEP00000010730	ENSODEP00000000355	ENSODEP00000010730	annotation not available	annotation not available	0.977
ENSODEP00000000355	ENSODEP00000011257	ENSODEP00000000355	ENSODEP00000011257	annotation not available	annotation not available	0.977
ENSODEP00000000355	ENSODEP00000015751	ENSODEP00000000355	ENSODEP00000015751	annotation not available	annotation not available	0.993
ENSODEP00000000355	ENSODEP00000016835	ENSODEP00000000355	ENSODEP00000016835	annotation not available	annotation not available	0.977
ENSODEP00000000355	ENSODEP00000025065	ENSODEP00000000355	ENSODEP00000025065	annotation not available	annotation not available	0.977
ENSODEP00000000355	TP53	ENSODEP00000000355	ENSODEP00000024162	annotation not available	Tumor protein p53.	0.775
ENSODEP00000001012	ENSODEP00000000199	ENSODEP00000001012	ENSODEP00000000199	annotation not available	annotation not available	0.825
ENSODEP00000001012	ENSODEP00000000355	ENSODEP00000001012	ENSODEP00000000355	annotation not available	annotation not available	0.825
ENSODEP00000001012	ENSODEP00000004407	ENSODEP00000001012	ENSODEP00000004407	annotation not available	annotation not available	0.867
ENSODEP00000001012	ENSODEP00000010730	ENSODEP00000001012	ENSODEP00000010730	annotation not available	annotation not available	0.811