Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001016annotation not available (100 aa)    
Predicted Functional Partners:
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.991
STX16
Syntaxin 16.
    
 0.990
STX6
Syntaxin 6.
    
 0.990
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.988
STX3
Syntaxin 3.
    
 0.986
STX4
Syntaxin 4.
    
 0.986
SNAP29
Synaptosome associated protein 29.
   
 0.978
STX2
Syntaxin 2.
    
 0.975
STX1A
Syntaxin 1A.
    
 0.967
STX8
Syntaxin 8.
    
 0.963
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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