STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL14A1Collagen type XIV alpha 1 chain. (1782 aa)    
Predicted Functional Partners:
COL4A2
Collagen type IV alpha 2 chain.
   
 0.955
COL4A6
Collagen type IV alpha 6 chain.
   
 0.950
COL6A2
Collagen type VI alpha 2 chain.
   
 0.945
ITGA1
Integrin subunit alpha 1.
    
 0.924
OGN
Osteoglycin.
   
 0.917
ENSODEP00000005624
annotation not available
    
 0.908
LAMA2
Laminin subunit alpha 2.
   
 0.895
ENSODEP00000009397
annotation not available
   
 0.894
ITGA2
Integrin subunit alpha 2.
    
 0.890
ENSODEP00000022403
annotation not available
    
 0.886
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.