STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCDH17Protocadherin 17. (1163 aa)    
Predicted Functional Partners:
PCDH12
Protocadherin 12.
   
 
 0.903
KCNS3
Potassium voltage-gated channel modifier subfamily S member 3.
   
  
 0.786
FJX1
Four-jointed box kinase 1.
   
 0.684
Pcdh20
annotation not available
    
 0.680
KCNG3
Potassium voltage-gated channel modifier subfamily G member 3.
      
 0.621
DSCAML1
DS cell adhesion molecule like 1.
    
 0.620
LRRTM1
Leucine rich repeat transmembrane neuronal 1.
     
 0.620
EPHA3
EPH receptor A3.
    
 0.615
PKP2
Plakophilin 2.
    
 0.608
GRM2
Glutamate metabotropic receptor 2.
      
 0.605
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.