ZFAND1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZFAND1

Zinc finger AN1-type containing 1. (166 aa)

Predicted Functional Partners:

SPATA5

0.857

VCP

0.857

NPLOC4

0.825

ENSODEP00000011030

0.821

PSMC4

0.811

PSMD6

0.806

ENSODEP00000002002

0.772

ENSODEP00000020751

0.772

ENSODEP00000000782

0.769

ENSODEP00000003531

0.769

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000782	ENSODEP00000002002	ENSODEP00000000782	ENSODEP00000002002	annotation not available	annotation not available	0.658
ENSODEP00000000782	ENSODEP00000011030	ENSODEP00000000782	ENSODEP00000011030	annotation not available	annotation not available	0.871
ENSODEP00000000782	ENSODEP00000020751	ENSODEP00000000782	ENSODEP00000020751	annotation not available	annotation not available	0.658
ENSODEP00000000782	NPLOC4	ENSODEP00000000782	ENSODEP00000011173	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.948
ENSODEP00000000782	PSMC4	ENSODEP00000000782	ENSODEP00000001884	annotation not available	Proteasome 26S subunit, ATPase 4.	0.586
ENSODEP00000000782	PSMD6	ENSODEP00000000782	ENSODEP00000004225	annotation not available	Proteasome 26S subunit, non-ATPase 6.	0.574
ENSODEP00000000782	SPATA5	ENSODEP00000000782	ENSODEP00000000461	annotation not available	Spermatogenesis associated 5.	0.963
ENSODEP00000000782	VCP	ENSODEP00000000782	ENSODEP00000019861	annotation not available	Valosin containing protein.	0.993
ENSODEP00000000782	ZFAND1	ENSODEP00000000782	ENSODEP00000001030	annotation not available	Zinc finger AN1-type containing 1.	0.769
ENSODEP00000002002	ENSODEP00000000782	ENSODEP00000002002	ENSODEP00000000782	annotation not available	annotation not available	0.658
ENSODEP00000002002	ENSODEP00000003531	ENSODEP00000002002	ENSODEP00000003531	annotation not available	annotation not available	0.658
ENSODEP00000002002	ENSODEP00000011030	ENSODEP00000002002	ENSODEP00000011030	annotation not available	annotation not available	0.609
ENSODEP00000002002	NPLOC4	ENSODEP00000002002	ENSODEP00000011173	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.609
ENSODEP00000002002	PSMC4	ENSODEP00000002002	ENSODEP00000001884	annotation not available	Proteasome 26S subunit, ATPase 4.	0.998
ENSODEP00000002002	PSMD6	ENSODEP00000002002	ENSODEP00000004225	annotation not available	Proteasome 26S subunit, non-ATPase 6.	0.998
ENSODEP00000002002	SPATA5	ENSODEP00000002002	ENSODEP00000000461	annotation not available	Spermatogenesis associated 5.	0.911
ENSODEP00000002002	VCP	ENSODEP00000002002	ENSODEP00000019861	annotation not available	Valosin containing protein.	0.911
ENSODEP00000002002	ZFAND1	ENSODEP00000002002	ENSODEP00000001030	annotation not available	Zinc finger AN1-type containing 1.	0.772
ENSODEP00000003531	ENSODEP00000002002	ENSODEP00000003531	ENSODEP00000002002	annotation not available	annotation not available	0.658
ENSODEP00000003531	ENSODEP00000011030	ENSODEP00000003531	ENSODEP00000011030	annotation not available	annotation not available	0.871