Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001043annotation not available (159 aa)    
Predicted Functional Partners:
SDHC
Succinate dehydrogenase complex subunit C.
   
 0.998
SDHB
Succinate dehydrogenase complex iron sulfur subunit B.
   
 0.998
ENSODEP00000025035
annotation not available
   
 0.997
SUCLG1
succinate-CoA ligase alpha subunit.
   
 
 0.972
ENSODEP00000000930
annotation not available
   
 0.958
ENSODEP00000017798
annotation not available
   
 0.958
CYC1
Cytochrome c1.
   
 0.911
Ndufb8
annotation not available
   
  
 0.903
NDUFB9
NADH:ubiquinone oxidoreductase subunit B9.
   
  
 0.891
ENSODEP00000010523
annotation not available
   
 0.888
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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