ENSODEP00000001053 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSODEP00000001053

annotation not available (135 aa)

Predicted Functional Partners:

FABP2

0.943

FABP4

0.911

ENSODEP00000016654

0.907

ENSODEP00000026418

0.907

FABP7

0.906

ENSODEP00000005232

0.904

ENSODEP00000005277

0.904

FABP3

0.896

PMP2

0.834

FABP9

0.834

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001053	ENSODEP00000005232	ENSODEP00000001053	ENSODEP00000005232	annotation not available	annotation not available	0.904
ENSODEP00000001053	ENSODEP00000005277	ENSODEP00000001053	ENSODEP00000005277	annotation not available	annotation not available	0.904
ENSODEP00000001053	ENSODEP00000016654	ENSODEP00000001053	ENSODEP00000016654	annotation not available	annotation not available	0.907
ENSODEP00000001053	ENSODEP00000026418	ENSODEP00000001053	ENSODEP00000026418	annotation not available	annotation not available	0.907
ENSODEP00000001053	FABP2	ENSODEP00000001053	ENSODEP00000012628	annotation not available	Fatty acid binding protein 2.	0.943
ENSODEP00000001053	FABP3	ENSODEP00000001053	ENSODEP00000004871	annotation not available	Fatty acid binding protein 3.	0.896
ENSODEP00000001053	FABP4	ENSODEP00000001053	ENSODEP00000000938	annotation not available	Fatty acid binding protein 4.	0.911
ENSODEP00000001053	FABP7	ENSODEP00000001053	ENSODEP00000007317	annotation not available	Fatty acid binding protein 7.	0.906
ENSODEP00000001053	FABP9	ENSODEP00000001053	ENSODEP00000000890	annotation not available	Fatty acid binding protein 9.	0.834
ENSODEP00000001053	PMP2	ENSODEP00000001053	ENSODEP00000000836	annotation not available	Peripheral myelin protein 2.	0.834
ENSODEP00000005232	ENSODEP00000001053	ENSODEP00000005232	ENSODEP00000001053	annotation not available	annotation not available	0.904
ENSODEP00000005232	ENSODEP00000016654	ENSODEP00000005232	ENSODEP00000016654	annotation not available	annotation not available	0.859
ENSODEP00000005232	ENSODEP00000026418	ENSODEP00000005232	ENSODEP00000026418	annotation not available	annotation not available	0.859
ENSODEP00000005232	FABP2	ENSODEP00000005232	ENSODEP00000012628	annotation not available	Fatty acid binding protein 2.	0.965
ENSODEP00000005232	FABP3	ENSODEP00000005232	ENSODEP00000004871	annotation not available	Fatty acid binding protein 3.	0.947
ENSODEP00000005232	FABP4	ENSODEP00000005232	ENSODEP00000000938	annotation not available	Fatty acid binding protein 4.	0.937
ENSODEP00000005232	FABP7	ENSODEP00000005232	ENSODEP00000007317	annotation not available	Fatty acid binding protein 7.	0.929
ENSODEP00000005232	FABP9	ENSODEP00000005232	ENSODEP00000000890	annotation not available	Fatty acid binding protein 9.	0.844
ENSODEP00000005232	PMP2	ENSODEP00000005232	ENSODEP00000000836	annotation not available	Peripheral myelin protein 2.	0.844
ENSODEP00000005277	ENSODEP00000001053	ENSODEP00000005277	ENSODEP00000001053	annotation not available	annotation not available	0.904