STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001067annotation not available (525 aa)    
Predicted Functional Partners:
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.988
ENSODEP00000020672
annotation not available
   
 0.985
ENSODEP00000022958
annotation not available
   
 0.985
ENSODEP00000008169
annotation not available
   
 0.979
ENSODEP00000010023
annotation not available
   
 0.979
ENSODEP00000022075
annotation not available
   
 
 0.964
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.964
Prpf40a
pre-mRNA processing factor 40 homolog A.
   
 0.958
ENSODEP00000019675
annotation not available
   
 0.958
ENSODEP00000008186
annotation not available
   
 0.957
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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