STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMP4CCharged multivesicular body protein 4C. (229 aa)    
Predicted Functional Partners:
CHMP2A
Charged multivesicular body protein 2A.
    
 0.993
ENSODEP00000005859
annotation not available
    
 0.991
ENSODEP00000013927
annotation not available
    
 0.990
PTPN23
Protein tyrosine phosphatase non-receptor type 23.
    
 0.989
VPS4B
Vacuolar protein sorting 4 homolog B.
    
 0.988
ENSODEP00000020685
annotation not available
    
 0.987
ENSODEP00000001811
annotation not available
    
 0.984
CHMP1A
Charged multivesicular body protein 1A.
    
 0.984
ENSODEP00000009754
annotation not available
    
 0.983
VPS25
Vacuolar protein sorting 25 homolog.
    
 0.978
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.