STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001089annotation not available (270 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
    
 0.986
TRAF6
TNF receptor associated factor 6.
    
  0.962
NGFR
Nerve growth factor receptor.
     
  0.949
ENSODEP00000011400
annotation not available
    
 
 0.936
TRIM33
Tripartite motif containing 33.
    
 0.916
ZNF213
Zinc finger protein 213.
    
   0.912
MZF1
Myeloid zinc finger 1.
    
   0.889
TRIM24
Tripartite motif containing 24.
    
 0.878
ZNF174
Zinc finger protein 174.
    
 
 0.803
ENSODEP00000025351
annotation not available
    
 0.783
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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